PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036523-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 369aa    MW: 40679.1 Da    PI: 5.171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036523-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0829522246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                      g+W++Ia+ ++ gRt++++k++w +
  PSME_00036523-RA 29 GRWSLIAAQLP-GRTDNELKNYWKS 52
                      26*********.***********75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-72861IPR009057Homeodomain-like
CDDcd001678.60E-62851No hitNo description
PROSITE profilePS500906.1212954IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-102958IPR009057Homeodomain-like
PfamPF002491.1E-52952IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MYKCPRAILF CQLDNGHCVN DKQLDATFGR WSLIAAQLPG RTDNELKNYW KSCIKKKLNL  60
KHNLSAGSSS SQSNFTDTKS HIPTQSNSNL VSVQYAHDVL TSSQSSQKYL DGIPEGSQAP  120
NKAFNILNSC KNPLCVQGVM ELKHKQVHDQ TDHEFSVDTD LTNGQGICYP NLWTNASSIH  180
IHESFSNPAA FISPSLHAKS STCCSTTLAT HETPCFPDIS QLGSTGINIP ALIIESDSSK  240
VKLENDENHI TCIDYSNETD SSDIVDPGAY TSHEENFNDS LNYLSYDINL QGVPAYIDIS  300
YLLPPIKEAM KANPFPTLIG RRGANGLFET ETECRAEDGQ VTTRAQDDMY NSHPCHPSVS  360
SAVDQMDFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-12myb domain protein 55